The genetics of exapted resistance to two exotic pathogens in pedunculate oak.
Identifieur interne : 000026 ( Main/Exploration ); précédent : 000025; suivant : 000027The genetics of exapted resistance to two exotic pathogens in pedunculate oak.
Auteurs : Jérôme Bartholomé [France] ; Benjamin Brachi [France] ; Benoit Marçais [France] ; Amira Mougou-Hamdane [France, Tunisie] ; Catherine Bodénès [France] ; Christophe Plomion [France] ; Cécile Robin [France] ; Marie-Laure Desprez-Loustau [France]Source :
- The New phytologist [ 1469-8137 ] ; 2020.
Abstract
Exotic pathogens cause severe damage in natural populations in the absence of coevolutionary dynamics with their hosts. However, some resistance to such pathogens may occur in naive populations. The objective of this study was to investigate the genetics of this so-called 'exapted' resistance to two pathogens of Asian origin (Erysiphe alphitoides and Phytophthora cinnamomi) in European oak. Host-pathogen compatibility was assessed by recording infection success and pathogen growth in a full-sib family of Quercus robur under controlled and natural conditions. Two high-resolution genetic maps anchored on the reference genome were used to study the genetic architecture of resistance and to identify positional candidate genes. Two genomic regions, each containing six strong and stable quantitative trait loci (QTLs) accounting for 12-19% of the phenotypic variation, were mainly associated with E. alphitoides infection. Candidate genes, especially genes encoding receptor-like-kinases and galactinol synthases, were identified in these regions. The three QTLs associated with P. cinnamomi infection did not colocate with QTLs found for E. alphitoides. These findings provide evidence that exapted resistance to E. alphitoides and P. cinnamomi is present in Q. robur and suggest that the underlying molecular mechanisms involve genes encoding proteins with extracellular signaling functions.
DOI: 10.1111/nph.16319
PubMed: 31711257
Affiliations:
- France, Tunisie
- Aquitaine, Grand Est, Languedoc-Roussillon, Lorraine (région), Nouvelle-Aquitaine, Occitanie (région administrative)
- Université de Bordeaux, Université de Lorraine
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Benoit" sort="Marcais, Benoit" uniqKey="Marcais B" first="Benoit" last="Marçais">Benoit Marçais</name><affiliation wicri:level="4"><nlm:affiliation>IAM, INRA, Université de Lorraine, Champenoux, Nancy, 54000, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>IAM, INRA, Université de Lorraine, Champenoux, Nancy, 54000</wicri:regionArea><placeName><region type="region" nuts="2">Grand Est</region><region type="old region" nuts="2">Lorraine (région)</region></placeName><orgName type="university">Université de Lorraine</orgName></affiliation></author><author><name sortKey="Mougou Hamdane, Amira" sort="Mougou Hamdane, Amira" uniqKey="Mougou Hamdane A" first="Amira" last="Mougou-Hamdane">Amira Mougou-Hamdane</name><affiliation wicri:level="4"><nlm:affiliation>BIOGECO, INRA, Université de Bordeaux, 69 route d'Arcachon, Cestas, 33610, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>BIOGECO, INRA, Université de Bordeaux, 69 route 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France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>BIOGECO, INRA, Université de Bordeaux, 69 route d'Arcachon, Cestas, 33610</wicri:regionArea><placeName><region type="region" nuts="2">Nouvelle-Aquitaine</region><region type="old region" nuts="2">Aquitaine</region></placeName><orgName type="university">Université de Bordeaux</orgName></affiliation></author><author><name sortKey="Plomion, Christophe" sort="Plomion, Christophe" uniqKey="Plomion C" first="Christophe" last="Plomion">Christophe Plomion</name><affiliation wicri:level="4"><nlm:affiliation>BIOGECO, INRA, Université de Bordeaux, 69 route d'Arcachon, Cestas, 33610, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>BIOGECO, INRA, Université de Bordeaux, 69 route d'Arcachon, Cestas, 33610</wicri:regionArea><placeName><region type="region" nuts="2">Nouvelle-Aquitaine</region><region type="old region" nuts="2">Aquitaine</region></placeName><orgName type="university">Université de Bordeaux</orgName></affiliation></author><author><name sortKey="Robin, Cecile" sort="Robin, Cecile" uniqKey="Robin C" first="Cécile" last="Robin">Cécile Robin</name><affiliation wicri:level="4"><nlm:affiliation>BIOGECO, INRA, Université de Bordeaux, 69 route d'Arcachon, Cestas, 33610, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>BIOGECO, INRA, Université de Bordeaux, 69 route d'Arcachon, Cestas, 33610</wicri:regionArea><placeName><region type="region" nuts="2">Nouvelle-Aquitaine</region><region type="old region" nuts="2">Aquitaine</region></placeName><orgName type="university">Université de Bordeaux</orgName></affiliation></author><author><name sortKey="Desprez Loustau, Marie Laure" sort="Desprez Loustau, Marie Laure" uniqKey="Desprez Loustau M" first="Marie-Laure" last="Desprez-Loustau">Marie-Laure Desprez-Loustau</name><affiliation wicri:level="4"><nlm:affiliation>BIOGECO, INRA, Université de Bordeaux, 69 route d'Arcachon, Cestas, 33610, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>BIOGECO, INRA, Université de Bordeaux, 69 route d'Arcachon, Cestas, 33610</wicri:regionArea><placeName><region type="region" nuts="2">Nouvelle-Aquitaine</region><region type="old region" nuts="2">Aquitaine</region></placeName><orgName type="university">Université de Bordeaux</orgName></affiliation></author></analytic><series><title level="j">The New phytologist</title><idno type="eISSN">1469-8137</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Exotic pathogens cause severe damage in natural populations in the absence of coevolutionary dynamics with their hosts. However, some resistance to such pathogens may occur in naive populations. The objective of this study was to investigate the genetics of this so-called 'exapted' resistance to two pathogens of Asian origin (Erysiphe alphitoides and Phytophthora cinnamomi) in European oak. Host-pathogen compatibility was assessed by recording infection success and pathogen growth in a full-sib family of Quercus robur under controlled and natural conditions. Two high-resolution genetic maps anchored on the reference genome were used to study the genetic architecture of resistance and to identify positional candidate genes. Two genomic regions, each containing six strong and stable quantitative trait loci (QTLs) accounting for 12-19% of the phenotypic variation, were mainly associated with E. alphitoides infection. Candidate genes, especially genes encoding receptor-like-kinases and galactinol synthases, were identified in these regions. The three QTLs associated with P. cinnamomi infection did not colocate with QTLs found for E. alphitoides. These findings provide evidence that exapted resistance to E. alphitoides and P. cinnamomi is present in Q. robur and suggest that the underlying molecular mechanisms involve genes encoding proteins with extracellular signaling functions.</div></front></TEI><pubmed><MedlineCitation Status="In-Process" Owner="NLM"><PMID Version="1">31711257</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1469-8137</ISSN><JournalIssue CitedMedium="Internet"><Volume>226</Volume><Issue>4</Issue><PubDate><Year>2020</Year><Month>05</Month></PubDate></JournalIssue><Title>The New phytologist</Title><ISOAbbreviation>New Phytol</ISOAbbreviation></Journal><ArticleTitle>The genetics of exapted resistance to two exotic pathogens in pedunculate oak.</ArticleTitle><Pagination><MedlinePgn>1088-1103</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/nph.16319</ELocationID><Abstract><AbstractText>Exotic pathogens cause severe damage in natural populations in the absence of coevolutionary dynamics with their hosts. However, some resistance to such pathogens may occur in naive populations. The objective of this study was to investigate the genetics of this so-called 'exapted' resistance to two pathogens of Asian origin (Erysiphe alphitoides and Phytophthora cinnamomi) in European oak. Host-pathogen compatibility was assessed by recording infection success and pathogen growth in a full-sib family of Quercus robur under controlled and natural conditions. Two high-resolution genetic maps anchored on the reference genome were used to study the genetic architecture of resistance and to identify positional candidate genes. Two genomic regions, each containing six strong and stable quantitative trait loci (QTLs) accounting for 12-19% of the phenotypic variation, were mainly associated with E. alphitoides infection. Candidate genes, especially genes encoding receptor-like-kinases and galactinol synthases, were identified in these regions. The three QTLs associated with P. cinnamomi infection did not colocate with QTLs found for E. alphitoides. These findings provide evidence that exapted resistance to E. alphitoides and P. cinnamomi is present in Q. robur and suggest that the underlying molecular mechanisms involve genes encoding proteins with extracellular signaling functions.</AbstractText><CopyrightInformation>© 2019 The Authors. New Phytologist © 2019 New Phytologist Trust.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bartholomé</LastName><ForeName>Jérôme</ForeName><Initials>J</Initials><Identifier Source="ORCID">0000-0002-0855-3828</Identifier><AffiliationInfo><Affiliation>BIOGECO, INRA, Université de Bordeaux, 69 route d'Arcachon, Cestas, 33610, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>AGAP, Université de Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, 34398, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>CIRAD, UMR AGAP, TA A-108 / 03 - Avenue Agropolis, Montpellier, 34398, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Brachi</LastName><ForeName>Benjamin</ForeName><Initials>B</Initials><Identifier Source="ORCID">0000-0001-5988-7150</Identifier><AffiliationInfo><Affiliation>BIOGECO, INRA, Université de Bordeaux, 69 route d'Arcachon, Cestas, 33610, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Marçais</LastName><ForeName>Benoit</ForeName><Initials>B</Initials><Identifier Source="ORCID">0000-0002-8107-644X</Identifier><AffiliationInfo><Affiliation>IAM, INRA, Université de Lorraine, Champenoux, Nancy, 54000, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mougou-Hamdane</LastName><ForeName>Amira</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>BIOGECO, INRA, Université de Bordeaux, 69 route d'Arcachon, Cestas, 33610, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Institut National Agronomique de Tunisie, Université de Carthage, 43 avenue Charles Nicolle Cité el Mahrajène, Tunis, 1082, Tunisia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bodénès</LastName><ForeName>Catherine</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>BIOGECO, INRA, Université de Bordeaux, 69 route d'Arcachon, Cestas, 33610, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Plomion</LastName><ForeName>Christophe</ForeName><Initials>C</Initials><Identifier Source="ORCID">0000-0002-3176-2767</Identifier><AffiliationInfo><Affiliation>BIOGECO, INRA, Université de Bordeaux, 69 route d'Arcachon, Cestas, 33610, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Robin</LastName><ForeName>Cécile</ForeName><Initials>C</Initials><Identifier Source="ORCID">0000-0002-8145-245X</Identifier><AffiliationInfo><Affiliation>BIOGECO, INRA, Université de Bordeaux, 69 route d'Arcachon, Cestas, 33610, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Desprez-Loustau</LastName><ForeName>Marie-Laure</ForeName><Initials>ML</Initials><Identifier Source="ORCID">0000-0001-6457-1089</Identifier><AffiliationInfo><Affiliation>BIOGECO, INRA, Université de Bordeaux, 69 route d'Arcachon, Cestas, 33610, France.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>12</Month><Day>23</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>New Phytol</MedlineTA><NlmUniqueID>9882884</NlmUniqueID><ISSNLinking>0028-646X</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Erysiphe alphitoides
</Keyword><Keyword MajorTopicYN="Y">Phytophthora cinnamomi
</Keyword><Keyword MajorTopicYN="Y">Quercus robur
</Keyword><Keyword MajorTopicYN="Y">disease resistance</Keyword><Keyword MajorTopicYN="Y">exapted resistance</Keyword><Keyword MajorTopicYN="Y">powdery mildew</Keyword><Keyword MajorTopicYN="Y">quantitative trait loci (QTL)</Keyword><Keyword MajorTopicYN="Y">receptor-like kinase</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>02</Month><Day>13</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>11</Month><Day>05</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>11</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>11</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>11</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31711257</ArticleId><ArticleId IdType="doi">10.1111/nph.16319</ArticleId></ArticleIdList><ReferenceList><Title>References</Title><Reference><Citation>Acevedo-Garcia J, Kusch S, Panstruga R. 2014. 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Science 291: 118-120.</Citation></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>France</li><li>Tunisie</li></country><region><li>Aquitaine</li><li>Grand Est</li><li>Languedoc-Roussillon</li><li>Lorraine (région)</li><li>Nouvelle-Aquitaine</li><li>Occitanie (région administrative)</li></region><orgName><li>Université de Bordeaux</li><li>Université de Lorraine</li></orgName></list><tree><country name="France"><region name="Nouvelle-Aquitaine"><name sortKey="Bartholome, Jerome" sort="Bartholome, Jerome" uniqKey="Bartholome J" first="Jérôme" last="Bartholomé">Jérôme Bartholomé</name></region><name sortKey="Bartholome, Jerome" sort="Bartholome, Jerome" uniqKey="Bartholome J" first="Jérôme" last="Bartholomé">Jérôme Bartholomé</name><name sortKey="Bartholome, Jerome" sort="Bartholome, Jerome" uniqKey="Bartholome J" first="Jérôme" last="Bartholomé">Jérôme Bartholomé</name><name sortKey="Bodenes, Catherine" sort="Bodenes, Catherine" uniqKey="Bodenes C" first="Catherine" last="Bodénès">Catherine Bodénès</name><name sortKey="Brachi, Benjamin" sort="Brachi, Benjamin" uniqKey="Brachi B" first="Benjamin" last="Brachi">Benjamin Brachi</name><name sortKey="Desprez Loustau, Marie Laure" sort="Desprez Loustau, Marie Laure" uniqKey="Desprez Loustau M" first="Marie-Laure" last="Desprez-Loustau">Marie-Laure Desprez-Loustau</name><name sortKey="Marcais, Benoit" sort="Marcais, Benoit" uniqKey="Marcais B" first="Benoit" last="Marçais">Benoit Marçais</name><name sortKey="Mougou Hamdane, Amira" sort="Mougou Hamdane, Amira" uniqKey="Mougou Hamdane A" first="Amira" last="Mougou-Hamdane">Amira Mougou-Hamdane</name><name sortKey="Plomion, Christophe" sort="Plomion, Christophe" uniqKey="Plomion C" first="Christophe" last="Plomion">Christophe Plomion</name><name sortKey="Robin, Cecile" sort="Robin, Cecile" uniqKey="Robin C" first="Cécile" last="Robin">Cécile Robin</name></country><country name="Tunisie"><noRegion><name sortKey="Mougou Hamdane, Amira" sort="Mougou Hamdane, Amira" uniqKey="Mougou Hamdane A" first="Amira" last="Mougou-Hamdane">Amira Mougou-Hamdane</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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